What does 98% purity actually tell you?
The short answer
It says that 98% of the signal in one test came from the main peak. It does not say that the peak is the right molecule, what else is in the vial, or how much peptide you actually have.
The short read
- Purity is usually peak area from HPLC, often read at a UV wavelength near 214 nm.
- Identity needs a different test, usually mass spectrometry.
- Water and salts are not counted, so peptide content can be much lower than purity.
High-performance liquid chromatography separates a mixture and reports each component as a peak. Purity is the main peak's share of total peak area. That one number says nothing about identity, which needs mass spectrometry; nothing about water and salt content; and nothing about sterility or endotoxin. A certificate that lists only purity answers one question out of several.
The full explanation
A certificate with the number 98% looks reassuring. Here is what the number is, and is not.
How purity is measured
The usual method is high-performance liquid chromatography, HPLC. A sample is pushed through a packed column and its components leave at different times. A detector, often set near 214 nanometres where peptide bonds absorb light, draws a peak for each one. Purity is the area of the main peak divided by the total area of all peaks.
What the number leaves out
- Identity. The main peak is only a peak. Without a second method, you cannot be sure it is the intended molecule. Mass spectrometry measures molecular weight and is the standard way to confirm identity.
- Look-alikes. By-products missing one link, or with a small chemical change, can leave the column at nearly the same time as the product and hide inside the main peak.
- Peptide content. Freeze-dried powder contains water and salts from the purification step, commonly trifluoroacetate. A vial of 98% pure peptide can have a significant share of its weight made of something else.
- Safety tests. Sterility and bacterial endotoxin are separate tests. A purity number says nothing about them.
- Method. Different columns and settings can give different numbers from the same sample.
What a fuller certificate shows
A thorough certificate lists the method and conditions, the mass found against the mass expected, the peptide content, and the date and lab. It should come from a laboratory you can identify.
Rule of thumb
Treat a single number as a claim, not as proof. The more questions a document answers, the more it is worth.
Education only. Not medical advice, no dosing, no product recommendations. Read this first.